do_NJ: Perform neighbour-joining tree estimation
In tjfinney/ANTTV: Analysis of New Testament Textual Variation (Code)
do_NJ R Documentation
Perform neighbour-joining tree estimation
Description
Perform the neighbor-joining tree estimation of Saitou and Nei on a distance matrix and plot the result.
Usage
do_NJ(dm, write = FALSE, fn = "output/NJ/output.png")
Arguments
dm
A distance matrix.
write
logical flag: (default = FALSE) if TRUE then a plot will be written to file fn.
fn
a connection or character string naming the file to write to.
Value
An object of class "phylo".
tjfinney/ANTTV documentation built on July 1, 2024, 11 p.m.
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| do_NJ | R Documentation |
Perform neighbour-joining tree estimation
Description
Perform the neighbor-joining tree estimation of Saitou and Nei on a distance matrix and plot the result.
Usage
do_NJ(dm, write = FALSE, fn = "output/NJ/output.png")
Arguments
dm |
A distance matrix. |
write |
logical flag: (default = FALSE) if TRUE then a plot will be written to file fn. |
fn |
a connection or character string naming the file to write to. |
Value
An object of class "phylo".
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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