Man pages for tjthurman/BAHZ
Bayesian Analysis of Hybrid Zones
| assign_stan_dist_int | Return the integer value for STAN that corresponds to each... |
| bahz-packge | bahz: Bayesian Analysis of Hybrid Zones |
| check_init_chain | Check whether the random initial values for a chain are... |
| check_prior_specification | Check that the distribution specified has the right number of... |
| check_prior_supported | Check that the distribution specified for a given parameter... |
| clear_bahz_cache | Clear cache of saved results from memoised functions in bahz |
| cline_summary | Summarize cline model results |
| correct_fis | Correct Fis estimates |
| extractValue | Extract values for prior distributions |
| fit_geno_cline | Fit a genetic cline model to your data |
| fit_pheno_cline | Fit a phenotypic cline model to your data |
| general_cline_eqn | Calculate allele frequencies for a cline |
| init_single_chain | Make the expression of init values for a single chain in Stan |
| internal_cline_eqn | Calculate allele frequencies for a single point along a cline |
| make_prior_config | Make a prior configuration file |
| parse_prior_file | Parse the prior yaml file and check it |
| pipe | Pipe operator |
| plot_cline | Plot a cline |
| predict_cline | Predict allele frequencies or mean phenotypes for a cline |
| prep_geno_data | Prepare your genetic cline data for loading into Stan |
| prep_init_list | Prepare the list of values for initializing the Stan model |
| prep_pheno_data | Prepare your phenotypic cline data for loading into Stan |
| prep_prior_list | Prepare the list of prior values to be fed into Stan |
| sim_geno_cline | Simulate genetic data from a cline |
| sim_pheno_cline | Simulate phenotypic data from a cline |
