internal_cline_eqn: Calculate allele frequencies for a single point along a cline
In tjthurman/BAHZ: Bayesian Analysis of Hybrid Zones

A flexible function to evaluate hybrid zone genetic cline equations at a single point. Used internally by general_cline_eqn, which calculates results for multiple points. See that help page for all the math details.

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internal_cline_eqn(transectDist, decrease = c(TRUE, FALSE), center,
  width, pmin = 0, pmax = 1, deltaL = NULL, tauL = NULL,
  deltaR = NULL, tauR = NULL)

`transectDist`	The position at which to evaluate the cline equation. Must be a numeric vector.
`decrease`	Is the cline decreasing in frequency? `TRUE` or `FALSE`.
`center`	The location of the cline center, in the same distance units as `transectDist`. Numeric.
`width`	The width of the cline, in the same distance units as `transectDist`. Numeric, must be greater than 0.
`pmin, pmax`	Optional. The minimum and maximum allele frequency values in the tails of the cline. Default values are `0` and `1`, respectively. Must be between 0 and 1 (inclusive). Numeric.
`deltaL, tauL`	Optional delta and tau parameters which describe the left exponential introgression tail. Must supply both to generate a tail. Default is `NULL` (no tails). Numeric. tauL must be between 0 and 1 (inclusive).
`deltaR, tauR`	Optional delta and tau parameters which describe the right exponential introgression tail. Must supply both to generate a tail. Default is `NULL` (no tails). Numeric. tauR must be between 0 and 1 (inclusive).

The result of evaluating a cline equation with the specified parameters at the specified distance (that is, p' in the notation of the equations above). A numeric vector of length 1.

tjthurman/BAHZ documentation built on May 30, 2020, 8:28 a.m.