FlyceptionR: FlyceptionR main script

In tkatsuki/FlyceptionR: R scripts and utilities for Flyception data analysis

Description

FlyceptionR main script

Usage

FlyceptionR(dir, prefix, autopos = T, interaction = T, reuse = T,
  fmf2tif = T, zoom = 0.85, FOI = F, binning = 1,
  fluo_flash_thresh = 10000, fv_flash_thresh = 135, av_flash_thresh = 100,
  dist_thresh = 4, rotate_camera = -180)

Arguments

dir	path to the directory that contains the data
prefix	prefix used for output files
autopos	logical. Perform camera alignment using FNCC?
interaction	logical. Perform interaction detection? Requires two flies.
reuse	logical. Reuse .RDS files?
fmf2tif	logical. Convert fly-view and arena-view fmf files into tif format?
zoom	numeric. Zoom factor between fly-view and fluo-view cameras.
FOI	a vector of two numbers indicating the first and last frames to be analyzed. If not specified, all frames will be analyzed.
binning	integer. Binning of the fluo-view camera.
fluo_flash_thresh	numeric. A threshold for detecting flashes in a fluo-view video.
fv_flash_thresh	integer. A threshold for detecting flashes in a fly-view video.
av_flash_thresh	integer. A threshold for detecting flashes in a arena-view video.
dist_thresh	numeric. A distance threshold for detecting fly-fly interactions.
rotate_camera	integer. Angle of the fluo-view camera.

Examples

FlyceptionR()

tkatsuki/FlyceptionR documentation built on Jan. 30, 2020, 7:31 a.m.