RcmdNotes.md

In tmastny/sagemaker: R Interface for the AWS Sagemaker API

==> devtools::check()

Updating sagemaker documentation Writing NAMESPACE Loading sagemaker Writing NAMESPACE ── Building ────────────────────────────────── sagemaker ── Setting env vars: ● CFLAGS : -Wall -pedantic -fdiagnostics-color=always ● CXXFLAGS : -Wall -pedantic -fdiagnostics-color=always ● CXX11FLAGS: -Wall -pedantic -fdiagnostics-color=always ─────────────────────────────────────────────────────────── ✔ checking for file ‘/Users/Tim/rpackages/sagemaker/DESCRIPTION’ ... ─ preparing ‘sagemaker’: (4.3s) ✔ checking DESCRIPTION meta-information ... ─ installing the package to build vignettes ✔ creating vignettes (33.3s) ─ checking for LF line-endings in source and make files and shell scripts (420ms) ─ checking for empty or unneeded directories ─ looking to see if a ‘data/datalist’ file should be added ─ building ‘sagemaker_0.0.1.tar.gz’

── Checking ────────────────────────────────── sagemaker ── Setting env vars: ● R_CHECK_CRAN_INCOMING_REMOTE: FALSE ● R_CHECK_CRAN_INCOMING : FALSE ● R_CHECK_FORCE_SUGGESTS : FALSE ── R CMD check ───────────────────────────────────────────────────────────────── using log directory ‘/Users/Tim/rpackages/sagemaker.Rcheck’ using R version 3.6.1 (2019-07-05) using platform: x86_64-apple-darwin15.6.0 (64-bit) using session charset: UTF-8 using options ‘--no-manual --as-cran’ checking for file ‘sagemaker/DESCRIPTION’ ... OK this is package ‘sagemaker’ version ‘0.0.1’ package encoding: UTF-8 checking package namespace information ... OK checking package dependencies ... OK checking if this is a source package ... OK checking if there is a namespace ... OK checking for executable files ... OK checking for hidden files and directories ... OK checking for portable file names ... OK checking for sufficient/correct file permissions ... OK checking serialization versions ... OK checking whether package ‘sagemaker’ can be installed ... OK checking installed package size ... OK checking package directory ... OK checking for future file timestamps ... OK checking ‘build’ directory ... OK checking DESCRIPTION meta-information ... OK checking top-level files ... OK checking for left-over files ... OK checking index information ... OK checking package subdirectories ... OK checking R files for non-ASCII characters ... OK checking R files for syntax errors ... OK checking whether the package can be loaded ... OK checking whether the package can be loaded with stated dependencies ... OK checking whether the package can be unloaded cleanly ... OK checking whether the namespace can be loaded with stated dependencies ... OK checking whether the namespace can be unloaded cleanly ... OK checking dependencies in R code ... OK checking S3 generic/method consistency ... OK checking replacement functions ... OK checking foreign function calls ... OK checking R code for possible problems ... NOTE sagemaker_attach_tuner: no visible binding for global variable ‘training_job_name’ sagemaker_attach_tuner: no visible binding for global variable ‘final_objective_value’ Undefined global functions or variables: final_objective_value training_job_name checking Rd files ... OK checking Rd metadata ... OK checking Rd line widths ... OK checking Rd cross-references ... OK checking for missing documentation entries ... OK checking for code/documentation mismatches ... OK checking Rd \usage sections ... OK checking Rd contents ... OK checking for unstated dependencies in examples ... OK checking contents of ‘data’ directory ... OK checking data for non-ASCII characters ... OK checking data for ASCII and uncompressed saves ... OK checking installed files from ‘inst/doc’ ... OK checking files in ‘vignettes’ ... OK checking examples ... OK checking for unstated dependencies in ‘tests’ ... OK checking tests ... Running ‘testthat.R’ [0m/16m] ERROR Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 1. jsonlite:::parse_string(txt, bigint_as_char)

WARNING:sagemaker:Couldn't call 'get_role' to get Role ARN from role name tim.mastny2 to get Role path. [16:44:37] WARNING: src/objective/regression_obj.cu:152: reg:linear is now deprecated in favor of reg:squarederror. ...............................................!══ testthat results ══════════════════════════════════════ [ OK: 14 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 6 ] 1. Error: endpoint predictions work (@test-ac-endpoint-predictions.R#18) 2. Error: one-dimensional endpoint formatting works (@test-prediction-formatting.R#5) 3. Error: 2-dimensional endpoint formatting works (@test-prediction-formatting.R#14) 4. Error: 5-dimensional endpoint formatting works (@test-prediction-formatting.R#27) 5. Error: one-dimensional local and endpoint formatting match (@test-prediction-formatting.R#37) 6. Error: 2-dimensional local and endpoint formatting match (@test-prediction-formatting.R#48)

Error: testthat unit tests failed Execution halted checking for unstated dependencies in vignettes ... OK checking package vignettes in ‘inst/doc’ ... OK checking re-building of vignette outputs ... OK DONE

Status: 1 ERROR, 1 NOTE See ‘/Users/Tim/rpackages/sagemaker.Rcheck/00check.log’ for details.

── R CMD check results ──────────────────────────────────── sagemaker 0.0.1 ──── Duration: 17m 4.2s

❯ checking tests ... See below...

❯ checking R code for possible problems ... NOTE sagemaker_attach_tuner: no visible binding for global variable ‘training_job_name’ sagemaker_attach_tuner: no visible binding for global variable ‘final_objective_value’ Undefined global functions or variables: final_objective_value training_job_name

── Test failures ───────────────────────────────────────────────── testthat ────

library(testthat) library(sagemaker)

test_check("sagemaker") Loading required package: dplyr

Attaching package: 'dplyr'

The following object is masked from 'package:testthat':

matches

The following objects are masked from 'package:stats':

filter, lag

The following objects are masked from 'package:base':

intersect, setdiff, setequal, union

Attaching package: 'recipes'

The following object is masked from 'package:stats':

step

WARNING:sagemaker:Using already existing model: xgboost-191114-2052-001-7b33b7a5 .....................................!WARNING:sagemaker:Using already existing model: xgboost-191114-2052-001-7b33b7a5

-------------------------------------------------------------------------------------------------!── 1. Error: endpoint predictions work (@test-ac-endpoint-p parse error: trailing garbage 10.2579030991,8.10296821594,10.027586937,9.2 (right here) ------^ Backtrace: 1. stats::predict(model, sagemaker::abalone[1:100, -1]) 2. sagemaker:::predict.sagemaker(...) 3. sagemaker:::format_endpoint_predictions(predictions) 4. base::as.character(.) 12. stringr::str_c(., "[", .data, "]") 13. jsonlite::parse_json(.) 14. jsonlite:::parse_and_simplify(...) 15. jsonlite:::parseJSON(txt, bigint_as_char) 1. jsonlite:::parse_string(txt, bigint_as_char)

── 2. Error: one-dimensional endpoint formatting works (@te parse error: trailing garbage 1,2,3,4[] (right here) ------^ Backtrace: 1. testthat::expect_equal(expected_tibble, format_endpoint_predictions(return_string)) 4. sagemaker:::format_endpoint_predictions(return_string) 5. base::as.character(.) 13. stringr::str_c(., "[", .data, "]") 14. jsonlite::parse_json(.) 15. jsonlite:::parse_and_simplify(...) 16. jsonlite:::parseJSON(txt, bigint_as_char) 1. jsonlite:::parse_string(txt, bigint_as_char)

── 3. Error: 2-dimensional endpoint formatting works (@test parse error: trailing garbage [1,1],[2,2][] (right here) ------^ Backtrace: 1. testthat::expect_equal(expected_num_class_2, format_endpoint_predictions(return_string_num_class_2)) 4. sagemaker:::format_endpoint_predictions(return_string_num_class_2) 5. base::as.character(.) 13. stringr::str_c(., "[", .data, "]") 14. jsonlite::parse_json(.) 15. jsonlite:::parse_and_simplify(...) 16. jsonlite:::parseJSON(txt, bigint_as_char) 1. jsonlite:::parse_string(txt, bigint_as_char)

── 4. Error: 5-dimensional endpoint formatting works (@test parse error: trailing garbage [1,1,1,1,1],[2,2,2,2,2][] (right here) ------^ Backtrace: 1. testthat::expect_equal(expected_num_class_5, format_endpoint_predictions(return_string_num_class_5)) 4. sagemaker:::format_endpoint_predictions(return_string_num_class_5) 5. base::as.character(.) 13. stringr::str_c(., "[", .data, "]") 14. jsonlite::parse_json(.) 15. jsonlite:::parse_and_simplify(...) 16. jsonlite:::parseJSON(txt, bigint_as_char) 1. jsonlite:::parse_string(txt, bigint_as_char)

── 5. Error: one-dimensional local and endpoint formatting parse error: trailing garbage 1,2,3,4[] (right here) ------^ Backtrace: 1. testthat::expect_equal(expected_tibble, format_endpoint_predictions(return_string)) 4. sagemaker:::format_endpoint_predictions(return_string) 5. base::as.character(.) 13. stringr::str_c(., "[", .data, "]") 14. jsonlite::parse_json(.) 15. jsonlite:::parse_and_simplify(...) 16. jsonlite:::parseJSON(txt, bigint_as_char) 1. jsonlite:::parse_string(txt, bigint_as_char)

── 6. Error: 2-dimensional local and endpoint formatting ma parse error: trailing garbage [1,1],[2,2][] (right here) ------^ Backtrace: 1. testthat::expect_equal(expected_tibble, format_endpoint_predictions(return_string)) 4. sagemaker:::format_endpoint_predictions(return_string) 5. base::as.character(.) 13. stringr::str_c(., "[", .data, "]") 14. jsonlite::parse_json(.) 15. jsonlite:::parse_and_simplify(...) 16. jsonlite:::parseJSON(txt, bigint_as_char) 1. jsonlite:::parse_string(txt, bigint_as_char)

WARNING:sagemaker:Couldn't call 'get_role' to get Role ARN from role name tim.mastny2 to get Role path. [16:44:37] WARNING: src/objective/regression_obj.cu:152: reg:linear is now deprecated in favor of reg:squarederror. ...............................................!══ testthat results ══════════════════════════════════════ [ OK: 14 | SKIPPED: 1 | WARNINGS: 0 | FAILED: 6 ] 1. Error: endpoint predictions work (@test-ac-endpoint-predictions.R#18) 2. Error: one-dimensional endpoint formatting works (@test-prediction-formatting.R#5) 3. Error: 2-dimensional endpoint formatting works (@test-prediction-formatting.R#14) 4. Error: 5-dimensional endpoint formatting works (@test-prediction-formatting.R#27) 5. Error: one-dimensional local and endpoint formatting match (@test-prediction-formatting.R#37) 6. Error: 2-dimensional local and endpoint formatting match (@test-prediction-formatting.R#48)

Error: testthat unit tests failed Execution halted

1 error ✖ | 0 warnings ✔ | 1 note ✖ Error: R CMD check found ERRORs Execution halted

Exited with status 1.

tmastny/sagemaker documentation built on July 15, 2020, 4:17 p.m.