spectraCondition: Get MS/MS spectra that are present in condition

In tnaake/MetCirc: Navigating mass spectral similarity in high-resolution MS/MS metabolomics data metabolomics data

Get MS/MS spectra that are present in condition

Description

spectraCondition returns the names of Spectra that are present in condition, corresponding to the slot metadata.

Usage

spectraCondition(sps, condition)

Arguments

sps	Spectra object of Spectra package
condition	character, vector with conditions found as columns in the metadata slot

Details

Helper function in createLink0df and shinyCircos.

Value

list, named list with character vector as entries that contains the names of the MS/MS entries in spectra that are present in the conditon (tissues, stress conditions, time points, etc.)

Author(s)

Thomas Naake [e-mail]

Examples

data("spectra", package = "MetCirc")
MetCirc:::spectraCondition(sps = sps_tissue,
    condition = c("SPL", "LIM", "ANT", "STY"))

tnaake/MetCirc documentation built on Nov. 3, 2024, 11:16 a.m.