Files in tnaake/MsQuality
MsQuality - Quality metric calculation via Spectra and MsExperiment objects

.Rhistory
.gitattributes
.github/workflows/main.yml
.gitignore
DESCRIPTION
NAMESPACE
R/Lee2019-data.R R/Lee2019_meta_vals-data.R R/function_MsExperiment_metrics.R R/function_Spectra_metrics.R R/function_Spectra_or_MsExperiment_metrics.R R/function_calculateMetrics_from_Spectra_or_MsExperiment.R R/function_visualizations.R README.md
data/Lee2019.RData
data/Lee_2019_meta_vals.RData
inst/NEWS
man/Lee_2019.Rd man/Lee_2019_meta_vals.Rd man/MsQuality-package.Rd man/areaUnderTIC.Rd man/areaUnderTICRTquantiles.Rd man/calculateMetrics.Rd man/calculateMetricsFromMsExperiment.Rd man/calculateMetricsFromSpectra.Rd man/dot-rtOrderSpectra.Rd man/extentIdentifiedPrecursorIntensity.Rd man/meanCharge.Rd man/medianCharge.Rd man/medianPrecursorMZ.Rd man/medianTICRTIQR.Rd man/medianTICofRTRange.Rd man/msSignal10XChange.Rd man/mzAcquisitionRange.Rd man/numberSpectra.Rd man/plotMetric.Rd man/plotMetricTibble.Rd man/precursorIntensityMean.Rd man/precursorIntensityQuartiles.Rd man/precursorIntensityRange.Rd man/precursorIntensitySD.Rd man/qualityMetrics.Rd man/ratioCharge1over2.Rd man/ratioCharge3over2.Rd man/ratioCharge4over2.Rd man/rtAcquisitionRange.Rd man/rtDuration.Rd man/rtIQR.Rd man/rtIQRrate.Rd man/rtOverMSQuarters.Rd man/rtOverTICquantile.Rd man/shinyMsQuality.Rd man/ticQuantileToQuantileLogRatio.Rd tests/testthat.R tests/testthat/test_function_Spectra_metrics.R tests/testthat/test_function_Spectra_or_MsExperiment_metrics.R tests/testthat/test_function_calculateMetrics_from_Spectra_or_MsExperiment.R tests/testthat/test_function_visualizations.R
vignettes/.Rhistory
vignettes/MsQuality-citations.bib
vignettes/MsQuality.Rmd
tnaake/MsQuality documentation built on Jan. 14, 2022, 7:34 p.m.