Files in tnaake/apoptosisQuantification
Assessment of apoptosis and necroptosus unsing proteomics
.gitignore
DESCRIPTION
NAMESPACE
R/markers.R
R/quantifyViaDecoupleR.R
R/quantifyViaLoadings.R
R/quantifyViaProportion.R
README.md
inst/NEWS
inst/protein_datasets/script_to_generate_tanzer2020.R
inst/protein_datasets/tanzer2020.RDS
inst/protein_datasets/tanzer2020_necro_a_cell.RDS
inst/protein_datasets/tanzer2020_secretome.RDS
inst/protein_markers/Tanzer2020_protein_markers_apoptosis.RDS
inst/protein_markers/Tanzer2020_protein_markers_necroptosis.RDS
inst/protein_markers/geneset_HALLMARK_APOPTOSIS.RDS
inst/protein_markers/geneset_HALLMARK_APOPTOSIS.txt
inst/subcellular_location/subcell_location_Mitochondria.tsv
man/apoptosisQuantification-package.Rd
man/calculateProportionOfMitochondrialProteins.Rd
man/combineLoadings.Rd
man/createLoadingsTbl.Rd
man/decoupleFeatures.Rd
man/getLoadingsOfMarkers.Rd
man/performWilcoxonTest.Rd
man/permuteFeatures.Rd
man/plotECDF.Rd
man/plotHistogram.Rd
man/plotPCAandLoadings.Rd
man/plotProportionOfMitochondrialProteins.Rd
man/plotSampleScores.Rd
man/plotViolin.Rd
man/prepareTbl.Rd
man/readMarkers.Rd
man/scoreSamples.Rd
man/splitNames.Rd
tests/testthat.R
tests/testthat/test_markers.R
tests/testthat/test_quantifyViaDecoupleR.R
tests/testthat/test_quantifyViaLoadings.R
tests/testthat/test_quantifyViaProportion.R
vignettes/apoptosisQuantification-citations.bib
vignettes/apoptosisQuantification.Rmd
