Man pages for tnaake/apoptosisQuantification
Assessment of apoptosis and necroptosus unsing proteomics
| apoptosisQuantification-package | Assessment of apoptosis and necroptosus unsing proteomics |
| calculateProportionOfMitochondrialProteins | Calculate contribution of mitochondrial proteins |
| combineLoadings | Combine the loadings/calculate the length of loading vectors |
| createLoadingsTbl | Create a tibble containing the loading values for marker and... |
| decoupleFeatures | Calculate score values using decoupleR/run_wmean |
| getLoadingsOfMarkers | Get PCA loadings of marker features |
| performWilcoxonTest | Perform the Wilcoxon rank sum and signed rank tests on... |
| permuteFeatures | Calculate score values by calculating difference between... |
| plotECDF | Plot empirical cumulative distribution function of loading... |
| plotHistogram | Plot the histogram (distribution) of loading values |
| plotPCAandLoadings | Plot PCA and loadings of markers and non-markers |
| plotProportionOfMitochondrialProteins | Plot proportion of mitochondrial proteins |
| plotSampleScores | Plot the contamination scores of samples |
| plotViolin | Plot the distribution of loading values via a violin plot |
| prepareTbl | Helper function to create the output of createLoadingsTbl |
| readMarkers | Load a file with known markers linked to apoptosis or... |
| scoreSamples | scoreSamples |
| splitNames | Split the names when separated by ; |
