circRNA_classt: circRNA classification data

In tofazzal4720/FcircSEC: Full Length Circular RNA Sequence Extraction and Classification

Description

This data is generated by r package FcircSEC.

Usage

data("circRNA_classt")

Format

A data frame with 14 observations on the following 15 variables.

ID

Circular RNA ID

chr

Chromosome

circ_start

Start position

circ_end

End position

circ_strand

Strand

splice_L

circRNA length

circ_type

circRNA type

e_count

Number of exons

e_sizes

Exon sizes

e_offsets

Start positions of exons

b_transcript

Transcript name

b_strand

Transcript strand

b_trans_start

Transcript start

b_trans_end

Transcript end

b_gene

Host gene

Details

This is the output generated by the circClassification function of the r package FcircSEC. It contains all necessary information for extracting the full length circRNA sequence.

Source

This example data is produced by r package FcircSEC.

References

R package FcircSEC.

Examples

data(circRNA_classt)
## maybe str(circRNA_classt) ; plot(circRNA_classt) ...

tofazzal4720/FcircSEC documentation built on Jan. 26, 2020, 7:50 a.m.