Files in tomasgomes/RTraCe
Read and plot TraCeR results
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/base_functions.R
R/plotting_functions.R
R/support_functions.R
README.md
RTraCe.Rproj
TODO
data/stubbington_2016/E-MTAB-3857.sdrf.txt
data/stubbington_2016/GRCm38.p5_gene_info.txt
data/stubbington_2016/filtered_TCRABDG_summary/TCR_summary.txt
data/stubbington_2016/filtered_TCRABDG_summary/cell_data.csv
data/stubbington_2016/filtered_TCRABDG_summary/clonotype_network_with_identifiers.dot
data/stubbington_2016/filtered_TCRABDG_summary/clonotype_network_with_identifiers.pdf
data/stubbington_2016/filtered_TCRABDG_summary/clonotype_network_without_identifiers.dot
data/stubbington_2016/filtered_TCRABDG_summary/clonotype_network_without_identifiers.pdf
data/stubbington_2016/filtered_TCRABDG_summary/clonotype_sizes.pdf
data/stubbington_2016/filtered_TCRABDG_summary/clonotype_sizes.txt
data/stubbington_2016/filtered_TCRABDG_summary/recombinants.txt
data/stubbington_2016/filtered_TCRABDG_summary/reconstructed_lengths_TCR_A.pdf
data/stubbington_2016/filtered_TCRABDG_summary/reconstructed_lengths_TCR_A.txt
data/stubbington_2016/filtered_TCRABDG_summary/reconstructed_lengths_TCR_B.pdf
data/stubbington_2016/filtered_TCRABDG_summary/reconstructed_lengths_TCR_B.txt
data/stubbington_2016/filtered_TCRABDG_summary/reconstructed_lengths_TCR_D.pdf
data/stubbington_2016/filtered_TCRABDG_summary/reconstructed_lengths_TCR_D.txt
data/stubbington_2016/filtered_TCRABDG_summary/reconstructed_lengths_TCR_G.pdf
data/stubbington_2016/filtered_TCRABDG_summary/reconstructed_lengths_TCR_G.txt
data/stubbington_2016/multiqc_salmon.txt
data/stubbington_2016/stubbington_2016_genes_salmon_counts.txt
python/parseTracer.py
vignettes/ExampleWorkflow.Rmd
vignettes/ExampleWorkflow.nb.html
vignettes/hello.Rd
