scripts/do.train.align.R

In tomashhurst/Spectre: A Toolbox for the Analysis of High-Dimensional Cytometry and Single-Cell Data

do.train.align <- function(dat,
                           use.cols,
                           batch.col,
                           
                           
                           
                           method =,
                           
                           xdim = 5,
                           ydim = 5,
                           nClus = 10,

                           
                           goal = "mean",
                           nQ = 101,
                           
                           ## Quantile settings
                           Qmin = 0.01,
                           Qmax = 0.99,
                           
                           
                           #nCells = NULL,
                           #scale = FALSE,
                           seed = 42,
                           mem.ctrl = TRUE){
  

}

  
  method = "CytoNorm", # Can also be "Quantile"
  
  ## CytoNorm settings
  goal = "mean",
  nQ = 101,
  
  ## Quantile settings
  Qmin = 0.01,
  Qmax = 0.99,