diffCLIP_BUM_HMM: Function BUM_FWBW

In tomateba/clipR: detection and comparison of RBP binding sites from CLIP related data

Description

diffCLIP_BUM_HMM compares CLIP data using HMM with Beta-Uniform Mixture emission (BUM model). Takes as input a matrix, two integers (number of replicates in condition 1 and condition 2 respectively), and generates a vector containing all the log ratios in read counts between replicates at every location.

Usage

diffCLIP_BUM_HMM(filename, Nc, Nt)

Arguments

filename	a matrix containing the number of mapped reads in each location, for each sample.
Nc	number of replicates in condition 1 (or control)
Nt	number of replicates in condition 2 (or treatment)

Value

a matrix containing posteriors in Beta-Uniform mixture HMM

tomateba/clipR documentation built on May 31, 2019, 6:10 p.m.