Description Usage Arguments Value

diffCLIP_BUM_HMM compares CLIP data using HMM with Beta-Uniform Mixture emission (BUM model). Takes as input a matrix, two integers (number of replicates in condition 1 and condition 2 respectively), and generates a vector containing all the log ratios in read counts between replicates at every location.

1 | ```
diffCLIP_BUM_HMM(filename, Nc, Nt)
``` |

`filename` |
a matrix containing the number of mapped reads in each location, for each sample. |

`Nc` |
number of replicates in condition 1 (or control) |

`Nt` |
number of replicates in condition 2 (or treatment) |

a matrix containing posteriors in Beta-Uniform mixture HMM

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