R/data_Bioc2019PanCancerStudy.R

In torongs82/Bioc2019PanCancerStudy: Bioc2019PanCancerStudy

#' A numeric vector with Stemness signature trained on PCBC's dataset
#' @docType data
#' @keywords internal
#' @name PCBC_stemSig
#' @format A numeric vector with 12955 genes
"PCBC_stemSig"

#' A matrix with Immune subtypes trained on TCGA's dataset
#' @docType data
#' @keywords internal
#' @name ImmuneMW
#' @format A matrix with 13742 genes and 6 immune subtypes
"ImmuneMW"

#' A data.frame for TCGAbiolinks to falitate multi -omics data retrieval
#' @docType data
#' @keywords internal
#' @name TableDataTypes
#' @format A data.frame with 7 rows (datatypes) and 4 columns (parameters)
"TableDataTypes"

#' A SummarizedExperiment object with 20 TCGA BRCA samples obtained from TCGAbiolinks
#' @docType data
#' @keywords internal
#' @name BRCARnaseqSE
#' @format A SummarizedExperiment with 21022 genes and 20 samples
"BRCARnaseqSE"