tpq/amalgam: Amalgamation-Based Dimension Reduction of Compositional Data

It is difficult to visualize high-dimensional compositional data. One approach involves amalgamating the parts into a new set of composite features called "amalgams". This package uses genetic algorithms to find an optimal set of amalgams that satisfies an objective function. Although amalgams themselves are low-dimensional compositions, they are not sub-compositions. Rather, amalgamation acts like a kind of non-linear dimension reduction that can facilitate data understanding. Note that inferences made on amalgamations may not agree with inferences made on the full composition.

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tpq/amalgam documentation built on March 14, 2020, 10:27 a.m.