Man pages for tpq/amalgam
Amalgamation-Based Dimension Reduction of Compositional Data
| adot | Aitchison Scalar Product for Vectors |
| amalgam | The 'amalgam' Package |
| amat | Aitchison Scalar Product for Matrices |
| as.slr | Turn Components into Log-Ratios |
| int.from2bit | Convert Bits to Integers |
| int.fromNbit | Convert Bits to Integers |
| KLD | Calculate Kullback-Leibler Divergence |
| objective.keepDist | Calculate Fitness of Binary Vector |
| objective.keepEntropy | Calculate Fitness of Binary Vector |
| objective.keepSKL | Calculate Fitness of Binary Vector |
| objective.keepWADIST | Calculate Fitness of Binary Vector |
| objective.maxDEntropy | Calculate Fitness of Binary Vector |
| objective.maxDSKL | Calculate Fitness of Binary Vector |
| objective.maxRDA | Calculate Fitness of Binary Vector |
| objective.maxRDA2 | Calculate Fitness of Binary Vector |
| packageCheck | Package Check |
| plot.amalgam | Plot 'amalgam' Object |
| prepareArgs | Argument Handler Function |
| print.amalgam | Show 'amalgam' Object |
| randAcomp | Create Random Acomp Data |
| randPois | Create Random Poisson Data |
| shannon | Calculate Shannon's Index |
| SKL | Calculate Symmetric Kullback-Leibler divergence |
| SKL_slow | Calculate Symmetric Kullback-Leibler divergence |
| uniformity | Calculate a Normalized Shannon's Index |
| wadist | Calculate Weighted Aitchison Distance |
| weight.Nto1 | Convert Bits to Weights Matrix |
| weight.NtoN | Convert Bits to Weights Matrix |
