Man pages for tpq/exprso
Rapid Deployment of Machine Learning Algorithms

arraySample ExprsBinary Data
arrayExprsImport Data as ExprsArray
arrayMultiSample ExprsMulti Data
buildBuild Models
build.Workhorse for build Methods
buildANNBuild Artificial Neural Network Model
buildDNNBuild Deep Neural Network Model
buildEnsembleBuild Ensemble
buildLDABuild Linear Discriminant Analysis Model
buildNBBuild Naive Bayes Model
buildRFBuild Random Forest Model
buildSVMBuild Support Vector Machine Model
calcMonteCarloCalculate 'plMonteCarlo' Performance
calcNestedCalculate 'plNested' Performance
calcStatsCalculate Model Performance
check.ctrlGSCheck 'ctrlGS' Arguments
classCheckClass Check
compareCompare 'ExprsArray' Objects
conjoinCombine 'exprso' Objects
ctrlFeatureSelectManage 'fs' Arguments
ctrlGridSearchManage 'plGrid' Arguments
ctrlModSetManage 'mod' Arguments
ctrlSplitSetManage 'split' Arguments
defaultArgSet an args List Element to Default Value
doMultiPerform Multiple "1 vs. all" Tasks
ExprsArray-classAn S4 class to store feature and annotation data
ExprsBinary-classAn S4 class to store feature and annotation data
ExprsEnsemble-classAn S4 class to store multiple models
ExprsMachine-classAn S4 class to store the model
ExprsModel-classAn S4 class to store the model
ExprsModule-classAn S4 class to store the model
ExprsMulti-classAn S4 class to store feature and annotation data
exprsoThe 'exprso' Package
exprso-predictDeploy Model
ExprsPipeline-classAn S4 class to store models built during high-throughput...
ExprsPredict-classAn S4 class to store model predictions
forceArgForce an args List Element to Value
fsSelect Features
fs.Workhorse for fs Methods
fsANOVASelect Features by ANOVA
fsCorSelect Features by Correlation
fsEbayesSelect Features by Moderated t-test
fsEdgerSelects Features by Exact Test
fsIncludeSelect Features by Explicit Reference
fsMrmreSelect Features by mRMR
fsNULLNull Feature Selection
fsPathClassRFESelect Features by Recursive Feature Elimination
fsPrcompReduce Dimensions by PCA
fsPropdSelect Features by Differential Proportionality Analysis
fsSampleSelect Features by Random Sampling
fsStatsSelect Features by Statistical Testing
getArgsBuild an args List
getFeaturesRetrieve Feature Set
GSE2eSetConvert GSE to eSet
makeGridFromArgsBuild Argument Grid
modProcess Data
modAcompCompositionally Constrain Data
modCLRLog-ratio Transform Data
modClusterCluster Subjects
modFilterHard Filter Data
modHistoryReplicate Data Process History
modNormalizeNormalize Data
modSubsetTidy Subset Wrapper
modSwapSwap Case Subjects
modTMMNormalize Data
modTransformLog Transform Data
packageCheckPackage Check
pipeProcess Pipelines
pipeFilterFilter 'ExprsPipeline' Object
pipeUnbootRename "boot" Column
plDeploy Pipeline
plCVPerform Simple Cross-Validation
plGridPerform High-Throughput Machine Learning
plGridMultiPerform High-Throughput Multi-Class Classification
plMonteCarloMonte Carlo Cross-Validation
plNestedNested Cross-Validation
RegrsArray-classAn S4 class to store feature and annotation data
RegrsModel-classAn S4 class to store the model
RegrsPredict-classAn S4 class to store model predictions
reRankSerialize "1 vs. all" Feature Selection
splitSplit Data
splitSampleSplit by Random Sampling
splitStratifySplit by Stratified Sampling
trainingSetExtract Training Set
validationSetExtract Validation Set
tpq/exprso documentation built on Dec. 5, 2017, 8:30 p.m.