launch_pbs: Launch jobs via qsub

In traitecoevo/experimentr: Run computational experiments

Description

Launch jobs via qsub, saving information about PBS job numbers

Usage

launch_pbs(experiment, task, id = NULL, jobfile = "pbs_jobs.csv",
  email = getOption("experimentr.email"), walltime = "48:00:00",
  queue = "normal", memory = "1GB", ncpus = "1", template = NULL,
  path = ".", verbose = TRUE)

Arguments

experiment	Name of the experiment
task	Name of the task
id	Vector of ids
jobfile	Name of the file to store information associating pbs job id with experimentrs information. This is used by move_pbs_logs.
email	Email address for PBS to use
walltime	Requested walltime (default two days)
queue	Name of the queue (default is "normal")
memory	Memory requested
ncpus	Number of cpus requested
template	Template to build job file from (or NULL)
path	Path to make/submit PBS files from
verbose	Print name of PBS file during submission?

traitecoevo/experimentr documentation built on May 31, 2019, 7:42 p.m.