phyndr_topology: phyndr for topo trees

Description Usage Arguments

Description

phyndr for topo trees

Usage

1
phyndr_topology(phy, data_species, topology)

Arguments

phy

An ape phylogeny. The tree must be ultrametric and this is enforced on entry.

data_species

A vector of species names for which we have trait data. Species names in both the tree and in this vector must be separated with underscores, not with spaces.

topology

A topological tree used to determine patterns of relatedness among species in phy. The better resolved this tree is and the better the overlap it has with phy and data_species the more useful this will be. Branch length information is not used.


traitecoevo/phyndr documentation built on May 31, 2019, 7:43 p.m.