README.md

In trang1618/Phase2.1NeuroRPackage: Analysis of COVID-19 patients with Neurological Conditions

Analysis of COVID-19 patients with Neurological Conditions

Install

You can install the development version of Phase2.1NeuroRPackage from GitHub with remotes:

# install.packages('remotes') # uncomment to install devtools
remotes::install_github('covidclinical/Phase2.1NeuroRPackage')

How to run

The main function runAnalysis() has 6 arguments. Please read the documentation with ?runAnalysis for a detailed explanation.

library(Phase2.1NeuroRPackage)

runAnalysis(mysite = 'penn', mask_thres = 10, blur_abs = 0, include_race = TRUE,
            out_dir = 'output', data_dir = '../thrombotic-penn/data')

See your site obfuscation parameters (mask_thres and blur_abs) here. If your site does not have race information, set include_race = FALSE.

Please submit the results to the central repository:

FourCePhase2.1AKI::submitAnalysis()

If you run into any problem adapting this code to your data, let us (@meghutch and @trang1618) know via Slack or submit an issue.

Thank you very much for your support!

trang1618/Phase2.1NeuroRPackage documentation built on Jan. 27, 2021, 8:03 p.m.