Files in transbioZI/BioMMex
BioMM: Biological-informed Multi-stage Machine learning framework
for phenotype prediction using omics data
DESCRIPTION
NAMESPACE
R/BioMM.R
R/dataProcess.R
R/exploreStat.R
R/resultReport.R
README.md
inst/NEWS
inst/extdata/cpgAnno.rds
inst/extdata/expData.rds
inst/extdata/goDB.rds
inst/extdata/keggDB.rds
inst/extdata/keggID2name202008.rds
inst/extdata/methylData.rds
inst/scripts/data4demo.R
inst/unitTests/test_BaseModels.R
inst/unitTests/test_inputFiles.R
man/BioMM.Rd
man/BioMMstage2pred.Rd
man/baseGLMnet.Rd
man/baseModel.Rd
man/baseRandForest.Rd
man/baseSVM.Rd
man/cirPlot4pathway.Rd
man/classifiACC.Rd
man/getDataByFilter.Rd
man/getMetrics.Rd
man/omics2pathlist.Rd
man/plotRankedFeature.Rd
man/plotVarExplained.Rd
man/predByBS.Rd
man/predByCV.Rd
man/predByFS.Rd
man/reconBySupervised.Rd
man/reconByUnsupervised.Rd
tests/runTest.R
vignettes/BioMMtutorial.Rmd
vignettes/BioMMtutorial.html
vignettes/Circular-Manhattan.pval_GO_SigRankBy_negPlogit.jpg
vignettes/GO_featuresVarExplained.png
vignettes/GO_topPath_negPlogit.png
vignettes/GO_topPath_negPlogit.xlsx
