Man pages for transbioZI/BioMMex
BioMM: Biological-informed Multi-stage Machine learning framework
for phenotype prediction using omics data
| baseGLMnet | Prediction by generalized linear regression models |
| baseModel | Base supervised machine learning models for prediction |
| baseRandForest | Prediction by random forest |
| baseSVM | Prediction by SVM |
| BioMM | BioMM end-to-end prediction |
| BioMMstage2pred | Prediction performance for stage-2 data using supervised... |
| cirPlot4pathway | Circular plot for a set of pathways |
| classifiACC | Compute the classification accuracy |
| getDataByFilter | Return the data by feature filtering |
| getMetrics | Compute the machine learning evaluation metrics |
| omics2pathlist | Map individual probes into pathway |
| plotRankedFeature | Plot top outcome-associated features |
| plotVarExplained | Plot data summary statistics |
| predByBS | Bootstrap resampling prediction via supervised machine... |
| predByCV | Cross validation prediction by supervised machine learning... |
| predByFS | Prediction by supervised machine learning along with feature... |
| reconBySupervised | Reconstruct stage-2 data by supervised machine learning... |
| reconByUnsupervised | Reconstruct stage-2 data by PCA |
