set_mcmc_specs: Set Specifications for MCMC

In trashbirdecology/bbsebird: Unifying BBS and eBird Data for Integrating Modeling

Set Specifications for MCMC

Description

Set Specifications for MCMC

Usage

set_mcmc_specs(
  na = 1000,
  nb = 5000,
  nc = 3,
  ni = 20000,
  nt = 10,
  in.parallel = FALSE,
  ncores = parallel::detectCores() - 1,
  dev.mode = 2
)

Arguments

na	number of adaptation iterations
nb	number of burn-in iterations per chain
nc	number of chains
ni	number of iterations per chain
nt	thinning rate (every nth iteration removed)
in.parallel	logical if TRUE will set number chains ('nc') value to 1
ncores	number of cores to run model in parallel
dev.mode	integer 1:3. 1=large-ish run; 2=moderate run; 3=quick, short run.

trashbirdecology/bbsebird documentation built on June 30, 2022, 12:18 a.m.