naive_transfer_entropy_fit: Graph reconstruction algorithm Calculates the transfer...

In travisbyrum/constructnet: Network reconstruction from time series

Description

Graph reconstruction algorithm Calculates the transfer entropy from i –> j. The resulting network is asymmetric

Usage

naive_transfer_entropy_fit(
  TS,
  delay_max = 1,
  n_bins = 2,
  threshold_type = "range",
  ...
)

Arguments

TS	array consisting of L observations from N sensors.
delay_max	the number of timesteps in the past to aggregate and average in order to get TE_ij
n_bins	the number of bins to turn values in the time series to categorical data, which is a pre-processing step to compute entropy.
threshold_type	Which thresholding function to use on the matrix of weights.
...	arguments

Value

a reconstructed graph with N nodes.

travisbyrum/constructnet documentation built on March 3, 2021, 12:18 p.m.