assembleMutations: extract clonal mutations from a Canopy run and its VAFs
In trichelab/fishfarm: A fish farm for fishplots.
Description
Usage
Arguments
Value
Description
In order to plot Canopy configs nicely, we use timescape.
This function massages Canopy output into mutation data.
Note: if genelist has impacts, coords, breakpoints, etc, they are added!
Usage
1
assembleMutations(output_tree, VAF, genelist = NULL)
Arguments
output_tree
canopy output
VAF
variant allele frequencies
genelist
coordinates for the genes (default is to autopopulate)
Value
a data.frame
trichelab/fishfarm documentation built on May 13, 2019, 12:10 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
In order to plot Canopy configs nicely, we use timescape. This function massages Canopy output into mutation data. Note: if genelist has impacts, coords, breakpoints, etc, they are added!
Usage
1 | assembleMutations(output_tree, VAF, genelist = NULL)
|
Arguments
output_tree |
canopy output |
VAF |
variant allele frequencies |
genelist |
coordinates for the genes (default is to autopopulate) |
Value
a data.frame
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.