ampkTorDomain: Protein domain annotations of AMPK-TOR data

In trvinh/PhyloProfileData: Data package for phylogenetic profile analysis using PhyloProfile tool

Description

Data frame containing the domain annotation for all proteins in phylogenetic profiles of the human AMPK-TOR pathways.

Usage

data(ampkTorDomain)

Format

A data frame with 5 columns and 133489 rows:

• seedIDGene ID & its ortholog, e.g. "ampk_ACACA#ampk_ACACA|ANOGA@7165@1|Q7PQ11|1"

• orthoIDSeed/Ortholog ID, e.g. "ampk_ACACA|ANOGA@7165@1|Q7PQ11|1"

• featureAnnotated feature/domain, e.g. "pfam_CPSase_L_D2"

• startStart position, e.g. "260"

• endEnd position, e.g. "462"

trvinh/PhyloProfileData documentation built on June 6, 2019, 8:36 p.m.