SPER: Calculate the SPER score list

In tsinghua-ZTX/SPER: Spatial Paired Expression Ratio

Calculate the SPER score list

Description

This function calculates the SPER score list with the input of the distance matrix, the ST data and the cell-type spatial CoDa.

Usage

SPER(dist.mat, dist.list, ST.mat, CoDa.data, gene.list = NULL)

Arguments

dist.mat	Distance matrix after rounded
dist.list	Distance list which includes the value of interest in the distance matrix
ST.mat	The ST matrix
CoDa.data	Cell-type spatial compositional data
gene.list	Gene ID list; to specify SPER running on a given list of genes instead of all genes in the spatial transciptomics matrix.

Value

A list of matrix, each representing the SPER subscores at a given distance

tsinghua-ZTX/SPER documentation built on June 7, 2024, 5:30 a.m.