Files in ttdtrang/cdev-paper

cdev: a ground-truth based measure to evaluate RNA-seq normalization methods

R/differential_expression.R R/metrics.R R/normalize.R R/plot.R R/project_pca.R R/simulation.R R/utils.R README.md notes/DE-test-magnitude-effect.Rmd notes/cdev-application.Rmd notes/cdev-real-data.Rmd notes/cdev-upstream-downstream.Rmd notes/cdev-vs-mse.Rmd notes/examine-real-datasets.Rmd notes/fluctuation-fraction_mapped_reads.Rmd notes/foldchange-distribution.Rmd scripts/cdev-ground_vs_ground.R scripts/cdev-random_vs_ground.R scripts/cdev-random_vs_random.R scripts/norm_methods-real_data.R scripts/norm_methods-simulation.R