API for ttdtrang/gbnorm
Graph-based Normalization of RNA-seq data
| Global functions | |
|---|---|
| build.graph | Man page Source code |
| calc.accuracy | Source code |
| calc.f1score | Source code |
| calc.precision | Source code |
| calc.recall | Source code |
| cdev | Man page Source code |
| cdev.from.scaling.factors | Source code |
| cdev.generic | Man page Source code |
| community.cut | Man page Source code |
| community.gce | Man page Source code |
| community.gce.ind | Source code |
| community.gce.ind2 | Source code |
| community.internal.density | Source code |
| community.shell | Man page Source code |
| community.strength.internal | Man page Source code |
| community.volume | Man page Source code |
| crossval | Man page |
| cv.lognorm | Man page Source code |
| fast.condNumber | Man page Source code |
| fast.sv | Source code |
| flatten_h5dataset | Source code |
| geom.mean | Man page Source code |
| get.references.apcluster | Man page Source code |
| get.references.blocks | Man page Source code |
| get.references.dbscan | Man page |
| get.references.hclust | Man page |
| get.references.v1 | Man page Source code |
| get.references.v2 | Source code |
| jaccard.sim | Source code |
| linspace | Man page Source code |
| measure.M | Man page Source code |
| normalize.by.deges | Man page |
| normalize.by.deseq | Man page |
| normalize.by.poissonseq | Man page |
| normalize.by.refs | Man page |
| normalize.by.ruv_r | Man page |
| normalize.by.scaleFactors | Man page |
| normalize.by.tmm | Man page |
| normalize.by.uq | Man page |
| normalize.vec | Source code |
| partitions | Source code |
| rank1.residuals | Man page Source code |
| removeEnsemblVersion | Source code |
| rmsd | Man page |
| sd.refs | Source code |
| simulate.counts | Man page Source code |
| srms | Man page |
| sv | Source code |
| variance.refs | Man page Source code |
