simulate.counts: simulate.counts

In ttdtrang/gbnorm: Graph-based Normalization of RNA-seq data

Description

simulate.counts

Usage

## S3 method for class 'counts'
simulate(
  ngenes,
  nlibs1,
  nlibs2,
  percentDE = 0.5,
  expected.lib.size = rep(1.1e+07, nlibs),
  fc = 2,
  random.seed = NULL,
  use.invChisq = TRUE,
  symmetric = FALSE,
  partiallyAsymm = TRUE,
  completelyAsymm = FALSE
)

Arguments

random.seed	[NULL]
use.invChisq	[TRUE] Use inverse chi-square or log-normal dispersion
symmetric	Symmetric conditions have the same number of up-regulated genes

Value

an object with 'counts' and 'differential'. 'counts' is the samples x genes matrix

ttdtrang/gbnorm documentation built on Dec. 23, 2021, 1:01 p.m.