jointNMF: attempt a joint nonnegative matrix factorization of two...

In ttriche/bayesCC: Bayesian consensus clustering

attempt a joint nonnegative matrix factorization of two matrices, as described in Wang et al. 2014, doi:10.1093/bioinformatics/btu679

Description

attempt a joint nonnegative matrix factorization of two matrices, as described in Wang et al. 2014, doi:10.1093/bioinformatics/btu679

Usage

jointNMF(
  mat1,
  mat2,
  findK = FALSE,
  howNA = c("both", "column", "row"),
  viaCV = FALSE,
  fracNA = 0.2
)

Arguments

mat1	the first matrix
mat2	the second matrix
findK	try to find the rank K for each matrix?
howNA	for rank finding, add NAs column-wise, row-wise, or both?
viaCV	for rank finding, should five-fold CV be used when imputing?
fracNA	for rank finding, what fraction of the data should be NA'ed?

ttriche/bayesCC documentation built on May 13, 2023, 11:48 a.m.