Man pages for ttriche/simpleSampleSearch
Lightweight search-and-download engine for SRA and GEO
| abbreviatedPlatforms | quick shortcuts for some platforms; could certainly use more... |
| checkForUpdates | Download an up-to-date GEOmetadb or SRAmetadb file if it has... |
| getDetails | get details for a specific series (experiment) |
| getExperiments | get the most recently updated experiments for a given search... |
| getFASTQ | get FASTQs for an SRA series (SRP) |
| getGSE | get SummarizedExperiment(s) for a GSE(s) (usually expression,... |
| getRecent | get the most recently updated series for a given platform |
| getSRA | get SRA entries, minus hassling with the database downloads |
| getSRP | get samples (or other stuff) for an SRA series (SRP) or other... |
| getSRPfromGSE | try to extract the associated SRP study from a GEO GSE, if... |
| getSummary | get a summary for a specific series (experiment) |
| strpop | a convenience function to pop pieces off of a string |
