Man pages for ttriche/simpleSampleSearch
Lightweight search-and-download engine for SRA and GEO

abbreviatedPlatformsquick shortcuts for some platforms; could certainly use more...
checkForUpdatesDownload an up-to-date GEOmetadb or SRAmetadb file if it has...
getDetailsget details for a specific series (experiment)
getExperimentsget the most recently updated experiments for a given search...
getFASTQget FASTQs for an SRA series (SRP)
getGSEget SummarizedExperiment(s) for a GSE(s) (usually expression,...
getRecentget the most recently updated series for a given platform
getSRAget SRA entries, minus hassling with the database downloads
getSRPget samples (or other stuff) for an SRA series (SRP) or other...
getSRPfromGSEtry to extract the associated SRP study from a GEO GSE, if...
getSummaryget a summary for a specific series (experiment)
strpopa convenience function to pop pieces off of a string
ttriche/simpleSampleSearch documentation built on May 27, 2017, 4:48 p.m.