Description Usage Arguments Value Examples
View source: R/createPandaStyle.R
This function is able to create a Cytoscape visual style for any PANDA network output.
1 | createPandaStyle(style.name = "PandaStyle")
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style.name |
Character string indicating the style name. Defaults to "PandaStyle" |
a visual style in Cytoscape Control Panel under "Style" button.
1 2 3 4 5 6 7 | # refer to the input datasets files of control TB dataset in inst/extdat as example
control_expression_file_path <- system.file("extdata", "expr10.txt", package = "netZoo", mustWork = TRUE)
motif_file_path <- system.file("extdata", "chip.txt", package = "netZoo", mustWork = TRUE)
ppi_file_path <- system.file("extdata", "ppi.txt", package = "netZoo", mustWork = TRUE)
# Run PANDA algorithm and access PANDA output
panda.net <- runPanda(e = control_expression_file_path, m = motif_file_path, ppi = ppi_file_path, rm_missing = TRUE)$panda
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