perform_snpcheck: Perform SNP check

In twbattaglia/snpcheck: Package to determine sample swaps from SNP data.

Perform SNP check

Description

Perform SNP check

Usage

perform_snpcheck(
  snp_table,
  study = NULL,
  sample = NULL,
  vecode = NULL,
  usable_minimum = 18,
  identical_minimum = 18,
  distance_max = 4,
  check_blood = F
)

Arguments

snp_table	A number
study	Study identifier to include
sample	Sample identifier to include
usable_minimum	Minimum usable SNP's to include in analysis
identical_minimum	Minimum identical SNP's to determine similarity
distance_max	Maximun distance of changing SNP loci

Value

Dataframe of pairwise comparisons

twbattaglia/snpcheck documentation built on April 22, 2024, 1:10 a.m.