Files in twesleyb/Uezu2016
iBioID Proteomics from Uezu, Kanak, Bradshaw et al., 2016
.gitignore
DESCRIPTION
NAMESPACE
Py/random_color.py
R/col2hex.R
R/fun.R
R/fx2str.R
R/ggplotScaleFreeFit.R
R/rgb2hex.R
README.md
analysis/ePSD-analysis/1_BioID-analysis.R
analysis/ePSD-analysis/2_compile-PPIs.R
analysis/iPSD-analysis/1_BioID-analysis.R
analysis/iPSD-analysis/2_compile-PPIs.R
analysis/iPSD-analysis/3_leidenalg-clustering.py
analysis/iPSD-analysis/4_post-leiden.R
analysis/iPSD-analysis/5_analyze-modules.R
analysis/iPSD-analysis/6_generate-colors.R
analysis/iPSD-analysis/7_module-gsea.R
data/collybistin.rda
data/colors.csv
data/colors.rda
data/cpm0_partition.rda
data/cpm1_colors.rda
data/cpm1_partition.rda
data/epsd.rda
data/epsd_bioid.rda
data/epsd_gene_map.rda
data/epsd_results.rda
data/gphn.rda
data/insyn1.rda
data/insyn2.rda
data/ipsd.rda
data/ipsd_bioid.rda
data/ipsd_colors.rda
data/ipsd_cytoscape_data.rda
data/ipsd_gene_map.rda
data/ipsd_partition.rda
data/ipsd_results.rda
data/ipsd_sig_prots.rda
data/modularity_colors.rda
data/modularity_partition.rda
data/surprise_colors.rda
data/surprise_partition.rda
inst/extdata/ePSD_BioID-Supplementary-data.xlsx
inst/extdata/iPSD_BioID-Supplementary-data.xlsx
man/col2hex.Rd
man/fx2str.Rd
man/ggplotScaleFreeFit.Rd
man/rgb2hex.Rd
refs/Uezu2016.pdf
refs/Uezu2016supp.pdf
tables/ePSD_iBioID_Results.xlsx
tables/iPSD_Module-GSEA.xlsx
tables/iPSD_iBioID_Results.xlsx
work/color-noa.R
work/compare_parts.R
work/epsd-hyperTest.R
work/hist.R
work/ipsd-getPPIs.R
work/multi-res-colors.R
work/tab.tex
work/table.R
work/table01.log
work/table01.tex
