README.md

In twesleyb/tidyProt: tidy statistical analysis of protein mass spectrometry

<<<<<<< HEAD

12/21/2020

separate dependencies: tidyProt: lmTestContrast lmerTestContrast

getPPIs: * data(musInteractome)

neten: * neten

geneLists mapIDs==getIDs (from getPPIs) other mapping functions * data('geneLists') # gene lists

=======

tidyProt

tidy statistical inference in protein mass spectrometry experiments

Installation

To install the tidyProt package, for example use devtools::install_github("twesleyb/tidyProt").

Key Dependencies

Insure you have installed the following R packages:

• dplyr install.packages("dplyr")
• impute BiocManager::install("impute")
• data.table install.packages("data.table")
• reshape2 install.packages("reshape2")
• lmerTest install.packages("lmerTest")

Usage

library(tidyProt)

# Linear Model Analysis
data(wash_bioid)

lmTestContrast()


# Mixed-Model Analysis
data(swip_tmt)
lmerTestConstrast()

fa8284bc407769da82e663b3ba503fe495d237dc

twesleyb/tidyProt documentation built on Feb. 4, 2021, 4:42 p.m.