Man pages for twillis209/pidProjCode
Utility code for my work on primary immunodeficiency
| back_to_back_manhattan | Writes out a back-to-back Manhattan plot. |
| bivariate_ecdf_cpp | Bivariate empirical cdf |
| bivariate_ecdf_par_cpp | Parallel implementation of bivariate empirical cdf |
| compute_maf_table | Returns table of MAF values by interval. |
| ecdf_cpp | Empirical cdf |
| fyr_theme | ggplot2 theme for first-year report |
| gps | Genome-wide pairwise association signal sharing test... |
| gps_maximands | Vector of GPS statistic maximands |
| gwas_to_granges | Convert GWAS data in data.table to GenomicRanges object |
| load_rds_or_run | Check for RDS file and if absent, make it |
| mix_rexp | Generates samples from two-part mixture of exponentials |
| multitrack_manhattan | Writes out a multitrack Manhattan. |
| rgps | Generates samples from the null distribution of the GPS... |
| rmixture | Sample from two-Gaussian mixture. |
| run_cl_cfdr | Run cFDR program with command-line arguments |
| run_cl_fcfdr | Run fcFDR program with command-line arguments |
| run_cl_fcfdr_with_log | Run fcFDR program with command-line arguments and logging of... |
| stratified_qqplot | Writes out a stratified Q-Q plot. |
| zoom_theme | ggplot2 theme for Zoom presentation |
