gwas_to_granges: Convert GWAS data in data.table to GenomicRanges object
In twillis209/pidProjCode: Utility code for my work on primary immunodeficiency
Description
Usage
Arguments
Value
View source: R/gwas_to_granges.R
Description
Convert GWAS data in data.table to GenomicRanges object
Usage
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gwas_to_granges(
data_table,
bp_label = "BP38",
chr_label = "CHR38",
max_p = NULL,
min_p = NULL
)
Arguments
data_table
data.table containing GWAS data
bp_label
name of basepair column
chr_label
name of chromosome column
max_p
non-inclusive upper bound on p-values
min_p
lower bound on p-values
Value
GenomicRanges object
twillis209/pidProjCode documentation built on Nov. 7, 2021, 3:01 p.m.
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Description Usage Arguments Value
View source: R/gwas_to_granges.R
Description
Convert GWAS data in data.table to GenomicRanges object
Usage
1 2 3 4 5 6 7 | gwas_to_granges(
data_table,
bp_label = "BP38",
chr_label = "CHR38",
max_p = NULL,
min_p = NULL
)
|
Arguments
data_table |
data.table containing GWAS data |
bp_label |
name of basepair column |
chr_label |
name of chromosome column |
max_p |
non-inclusive upper bound on p-values |
min_p |
lower bound on p-values |
Value
GenomicRanges object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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