rMR-package: Importing Data from Loligo Systems Software Output,...
In tyler-l-moulton/rMR: Importing Data from Loligo Systems Software, Calculating Metabolic Rates and Critical Tensions
Description
Details
Author(s)
References
See Also
Description
Analysis of oxygen consumption data generated by Loligo (R) Systems respirometry equipment. The package includes a function for loading data output by Loligo's 'AutoResp' software (get.witrox.data()), functions for calculating metabolic rates over user-specified time intervals, extracting critical points from data using broken stick regressions based on Yeager and Ultsch (1989), and easy functions for converting between different units of barometric pressure.
Details
Package: rMR
Type: Package
Version: 1.0.4
Date: 2017-01-19
License: 3
Author(s)
Tyler L. Moulton
Maintainer: Tyler L. Moulton <tyler.moulton@mail.mcgill.ca>
References
Benson, B.B., and Daniel Krause, Jr (1980). The concentration and isotopic fractionation of gases dissolved in freshwater in equilibrium with the atmosphere. 1. Oxygen: Limnology and Oceanography, vol. 25, no. 4, p. 662-671. doi: 10.4319/lo.1980.25.4.0662.
Gnaiger, Erich, and Hellmuth Forstner, eds. (2012). Polarographic oxygen sensors: Aquatic and physiological applications. Springer Science & Business Media. doi: 10.1007/978-3-642-81863-9.
Lumley, Thomas (2013). "biglm: bounded memory linear and generalized linear models". 0.9-1. https://CRAN.R-project.org/package=biglm.
McDonnell, Laura H., and Lauren J. Chapman (2016). "Effects of thermal increase on aerobic capacity and swim performance in a tropical inland fish." Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology 199: 62-70. doi: 10.1016/j.cbpa.2016.05.018.
Mechtly, E. A. (1973). The International System of Units, Physical Constants and Conversion Factors. NASA SP-7012, Second Revision, National Aeronautics and Space Administration, Washington, D.C. https://ntrs.nasa.gov/archive/nasa/casi.ntrs.nasa.gov/19730018242.pdf.
Roche, Dominique G., et al. (2013). "Finding the best estimates of metabolic rates in a coral reef fish." Journal of Experimental Biology 216.11: 2103-2110. doi: 10.1242/jeb.082925.
U.S. Geological Survey (2011). Change to solubility equations for oxygen in water: Office of Water Quality Technical Memorandum 2011.03, accessed July 15, 2011, at http://water.usgs.gov/admin/memo/QW/qw11.03.pdf.
Yeager, D. P. and Ultsch, G. R. (1989). Physiological regulation and conformation: a BASIC program for the determination of critical points. Physiological Zoology, 888-907. doi: 10.1086/physzool.62.4.30157935.
http://www.loligosystems.com/
See Also
tyler-l-moulton/rMR documentation built on May 3, 2019, 1:53 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Details Author(s) References See Also
Description
Analysis of oxygen consumption data generated by Loligo (R) Systems respirometry equipment. The package includes a function for loading data output by Loligo's 'AutoResp' software (get.witrox.data()), functions for calculating metabolic rates over user-specified time intervals, extracting critical points from data using broken stick regressions based on Yeager and Ultsch (1989), and easy functions for converting between different units of barometric pressure.
Details
| Package: | rMR |
| Type: | Package |
| Version: | 1.0.4 |
| Date: | 2017-01-19 |
| License: | 3 |
Author(s)
Tyler L. Moulton
Maintainer: Tyler L. Moulton <tyler.moulton@mail.mcgill.ca>
References
Benson, B.B., and Daniel Krause, Jr (1980). The concentration and isotopic fractionation of gases dissolved in freshwater in equilibrium with the atmosphere. 1. Oxygen: Limnology and Oceanography, vol. 25, no. 4, p. 662-671. doi: 10.4319/lo.1980.25.4.0662.
Gnaiger, Erich, and Hellmuth Forstner, eds. (2012). Polarographic oxygen sensors: Aquatic and physiological applications. Springer Science & Business Media. doi: 10.1007/978-3-642-81863-9.
Lumley, Thomas (2013). "biglm: bounded memory linear and generalized linear models". 0.9-1. https://CRAN.R-project.org/package=biglm.
McDonnell, Laura H., and Lauren J. Chapman (2016). "Effects of thermal increase on aerobic capacity and swim performance in a tropical inland fish." Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology 199: 62-70. doi: 10.1016/j.cbpa.2016.05.018.
Mechtly, E. A. (1973). The International System of Units, Physical Constants and Conversion Factors. NASA SP-7012, Second Revision, National Aeronautics and Space Administration, Washington, D.C. https://ntrs.nasa.gov/archive/nasa/casi.ntrs.nasa.gov/19730018242.pdf.
Roche, Dominique G., et al. (2013). "Finding the best estimates of metabolic rates in a coral reef fish." Journal of Experimental Biology 216.11: 2103-2110. doi: 10.1242/jeb.082925.
U.S. Geological Survey (2011). Change to solubility equations for oxygen in water: Office of Water Quality Technical Memorandum 2011.03, accessed July 15, 2011, at http://water.usgs.gov/admin/memo/QW/qw11.03.pdf.
Yeager, D. P. and Ultsch, G. R. (1989). Physiological regulation and conformation: a BASIC program for the determination of critical points. Physiological Zoology, 888-907. doi: 10.1086/physzool.62.4.30157935.
http://www.loligosystems.com/
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.