install_netmhcpan: Install NetMHCpan

In tzina97/netMHCpanW: Interface to 'NetMHCpan'

Install NetMHCpan

Description

Install NetMHCpan to a local folder, by downloading the binary and data files. Use install_netmhcpan_from_files to install NetMHCpan from files that are already downloaded.

Usage

install_netmhcpan(
  netmhcpan_bin_url = get_netmhcpan_bin_url(),
  netmhcpan_data_url = get_netmhcpan_data_url(),
  verbose = FALSE,
  netmhcpan_archive_filename = get_netmhcpan_archive_filename(),
  netmhcpan_folder_name = get_default_netmhcpan_folder(),
  temp_local_file = tempfile(pattern = "netmhcpan_install_netmhcpan_")
)

Arguments

netmhcpan_bin_url	URL to download the NetMHCpan binary tarball file from, similar to, for example, FIX LINK. Use get_netmhcpan_bin_url to get the default URL.
netmhcpan_data_url	URL to download the NetMHCpan data tarball file from, similar to, for example, https://services.healthtech.dtu.dk/services/NetMHCpan-4.1/data.tar.gz Use get_netmhcpan_data_url to get the default URL.
verbose	set to TRUE for more output
netmhcpan_archive_filename	the NetMHCpan archive filename, for example netMHCpan-4.1b.Linux.tar.gz, which is used in installation of NetMHCpan. Use get_netmhcpan_archive_filename to get this filename.
netmhcpan_folder_name	the folder (to be) used by NetMHCpan. From this location, a subfolder for NetMHCpan is created. Use get_default_netmhcpan_folder to see the location of the default NetMHCpan folder. Use get_default_netmhcpan_subfolder to see the location of the default NetMHCpan subfolder.
temp_local_file	path to the temporary file to store the URL to. This file will be deleted afterwards.

Details

These are three steps:

• Install the NetMHCpan binary, using install_netmhcpan_bin

• Install the NetMHCpan data, using install_netmhcpan_data

• Set up NetMHCpan, using set_up_netmhcpan

Value

Nothing

Author(s)

Richèl J.C. Bilderbeek

Examples

  install_netmhcpan()

tzina97/netMHCpanW documentation built on April 26, 2022, 1:18 a.m.