Man pages for uc-bd2k/paslincs
Pathway activity signatures from LINCS L1000 consensus gene signatures
| CalcAdj | Calculate the adjacency matrix |
| CalcNodeScore | Calculate the node contribution score |
| CalcPathSig | Calculate the pathway activity signature (PAS) |
| CalcScore | Calculate consistency score |
| CalcScoreSummary | Calculate the summarized consistency score for each gene... |
| CalcTopoSig | Calculate spectral decomposition of a pathway topology |
| CalcTPSig | Calculate the association signature by using topology... |
| downloadLINCS | Download LINCS data |
| EdgeInfo | Parse the protein-protein interactions of a KEGG pathway |
| retrieveKGML.new | Retrieve the KGML file of a KEGG pathway |
