retrieveKGML.new: Retrieve the KGML file of a KEGG pathway

Description Usage Arguments Value Examples

Description

Retrieve the KGML file of a KEGG pathway

Usage

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retrieveKGML.new(pathway, organism, destfile, method = "auto", ...)

Arguments

pathway

A character value of KEGG pathway ID as in EdgeInfo.

organism

A character value of the three- or four-letter KEGG organism code (see organism code at: https://www.genome.jp/kegg-bin/get_htext?br08601.keg).

destfile

The output file, to which the KGML file is saved.

method

A character value of the method used to download file. Default is "auto". See details of KEGGgraph::retrieveKGML (https://www.rdocumentation.org/packages/KEGGgraph/versions/1.30.0/topics/getKGMLurl).

Value

The KGML file is saved in the specified file destfile.

Examples

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tmp<- tempfile()
retrieveKGML.new("hsa04150","hsa",tmp)

uc-bd2k/paslincs documentation built on Nov. 25, 2019, 8:38 p.m.