Files in uclahs-cds/public-R-NanoStringNorm
Normalize NanoString miRNA and mRNA Data

.Rbuildignore

.cicd-env

.github/ISSUE_TEMPLATE/BUG_REPORT.md .github/PULL_REQUEST_TEMPLATE.md

.github/workflows/r-lib-check.yaml

.github/workflows/static-analysis.yml

.gitignore

DESCRIPTION

LICENSE.md

NAMESPACE

NEWS.md R/NanoStringNorm.R R/Plot.NanoStringNorm.R R/Plot.NanoStringNorm.gvis.R R/background.normalization.R R/check.trait.values.R R/code.count.normalization.R R/get.batch.effects.R R/get.beta.se.and.p.R R/get.gene.summary.stats.R R/get.geo.mean.R R/get.mean.sd.and.cv.R R/get.sample.summary.stats.R R/get.trait.summary.stats.R R/get.ttest.and.foldchange.R R/norm.comp.R R/nsn.R R/other.normalization.R R/other.normalization.quantile.R R/other.normalization.rank.normal.R R/other.normalization.zscore.R R/output.formatting.R R/predict.concentration.R R/probe.correction.factor.normalization.R R/read.csv.RCC.R R/read.markup.RCC.R R/sample.content.normalization.R README.md

data/NanoString.rda

inst/doc/NanoStringNorm_Introduction.pdf

inst/extdata/RCC_files/RCCCollector1_rat_tcdd.csv

inst/extdata/input/2011-11-01_NanoString_mRNA_TCDD_anno.txt

inst/extdata/input/date_data.txt

inst/extdata/input/mRNA_TCDD.txt

inst/extdata/input/mRNA_TCDD_anno.txt

inst/extdata/input/mRNA_TCDD_matrix.txt

inst/extdata/input/mRNA_TCDD_strain_info.txt

inst/extdata/output/date_data.txt

inst/extdata/output/mRNA_TCDD_Batch_effects.txt.gz

inst/extdata/output/mRNA_TCDD_Check_Traits.txt.gz

inst/extdata/output/mRNA_TCDD_Gene_Summary.txt.gz

inst/extdata/output/mRNA_TCDD_NSN_none.txt.gz

inst/extdata/output/mRNA_TCDD_NSN_none_matrix.txt.gz

inst/extdata/output/mRNA_TCDD_NSN_random.txt.gz

inst/extdata/output/mRNA_TCDD_Output_Formatting_roundT_logT.txt.gz

inst/extdata/output/mRNA_TCDD_Predict_Conc.txt.gz

inst/extdata/output/mRNA_TCDD_Sample_Summary.txt.gz

inst/extdata/output/mRNA_TCDD_geo.mean_Code_Count_Normalization.txt.gz

inst/extdata/output/mRNA_TCDD_housekeeping.geomean_SampleContent_Normalization.txt.gz

inst/extdata/output/mRNA_TCDD_housekeeping.sum_SampleContent_Normalization.txt.gz

inst/extdata/output/mRNA_TCDD_max_Background_Normalization.txt.gz

inst/extdata/output/mRNA_TCDD_mean.2sd_Background_Normalization.txt.gz

inst/extdata/output/mRNA_TCDD_mean_Background_Normalization.txt.gz

inst/extdata/output/mRNA_TCDD_quantile_Other_Normalization.txt.gz

inst/extdata/output/mRNA_TCDD_sum_Code_Count_Normalization.txt.gz

inst/extdata/output/mRNA_TCDD_top.geo.mean_SampleContent_Normalization.txt.gz

inst/extdata/output/mRNA_TCDD_top.mean_SampleContent_Normalization.txt.gz

inst/extdata/output/mRNA_TCDD_total.sum_SampleContent_Normalization.txt.gz

inst/extdata/output/mRNA_TCDD_zscore_Other_Normalization.txt.gz

metadata.yaml

tests/testthat.R

tests/testthat/data/load.rcc.Rda

vignettes/NanoStringNorm_Introduction.Rnw

vignettes/Rat_Strain_Normalization_Method_Comparison.png

vignettes/plot_NSN_gvis_geneStats_screenshot.png

vignettes/plot_NSN_gvis_sampleStats_screenshot.png

uclahs-cds/public-R-NanoStringNorm documentation built on Feb. 13, 2025, 11:43 a.m.

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uclahs-cds/public-R-NanoStringNorm
Normalize NanoString miRNA and mRNA Data

Files in uclahs-cds/public-R-NanoStringNorm
Normalize NanoString miRNA and mRNA Data

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uclahs-cds/public-R-NanoStringNorm Normalize NanoString miRNA and mRNA Data

Files in uclahs-cds/public-R-NanoStringNorm Normalize NanoString miRNA and mRNA Data

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uclahs-cds/public-R-NanoStringNorm
Normalize NanoString miRNA and mRNA Data

Files in uclahs-cds/public-R-NanoStringNorm
Normalize NanoString miRNA and mRNA Data