get.bedpe.id: get BEDPE ID from VCF ID
In uclahs-cds/public-R-bedr: Genomic Region Processing using Tools Such as 'BEDTools', 'BEDOPS' and 'Tabix'
get.bedpe.id R Documentation
get BEDPE ID from VCF ID
Description
Get IDs for each breakpoint pair from the VCF file.
Used in the 'vcf2bedpe' function.
Usage
get.bedpe.id(df)
Arguments
df
a dataframe object from a VCF file
Value
A column vector of names assigned to each Structural Variant in the BEDPE file
Author(s)
Helena Winata
Examples
## Not run:
name <- get.bedpe.id(x.vcf)
## End(Not run)
uclahs-cds/public-R-bedr documentation built on May 12, 2024, 3:56 p.m.
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| get.bedpe.id | R Documentation |
get BEDPE ID from VCF ID
Description
Get IDs for each breakpoint pair from the VCF file. Used in the 'vcf2bedpe' function.
Usage
get.bedpe.id(df)
Arguments
df |
a dataframe object from a VCF file |
Value
A column vector of names assigned to each Structural Variant in the BEDPE file
Author(s)
Helena Winata
Examples
## Not run:
name <- get.bedpe.id(x.vcf)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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