.Rbuildignore
          
        
          
            
            .bowerrc
          
        
          
            
            .gitignore
          
        
          
            
            DESCRIPTION
          
        
          
            
            NAMESPACE
          
        
          
            
            R/dalliance.R
          
        
          
            
            R/dalliance_dirty.R
          
        
          
            
            R/dalliance_post.txt
          
        
          
            
            R/dalliance_pre.txt
          
        
          
            
            R/data.R
          
        
          
            
            R/predefined_annotations.R
          
        
          
            
            R/predefined_genomes.R
          
        
          
            
            R/wrangle_tracks.R
          
        
          
            
            README.md
          
        
          
            
            dallianceR.Rproj
          
        
          
            
            data/ann_tab.rda
          
        
          
            
            data/ref_tab.rda
          
        
          
            
            examples/bigwig/SRR1033457.fastq_GRCh38.77_STAR_Signal.Unique.str1.out.sorted.bw
          
        
          
            
            examples/bigwig/SRR1033458.fastq_GRCh38.77_STAR_Signal.Unique.str1.out.sorted.bw
          
        
          
            
            examples/bigwig/SRR1033459.fastq_GRCh38.77_STAR_Signal.Unique.str1.out.sorted.bw
          
        
          
            
            examples/bigwig/SRR1033460.fastq_GRCh38.77_STAR_Signal.Unique.str1.out.sorted.bw
          
        
          
            
            examples/bigwig/SRR1033461.fastq_GRCh38.77_STAR_Signal.Unique.str1.out.sorted.bw
          
        
          
            
            examples/bigwig/SRR1033462.fastq_GRCh38.77_STAR_Signal.Unique.str1.out.sorted.bw
          
        
          
            
            examples/bigwig/SRR1107836.fastq_GRCh38.77_STAR_Signal.Unique.str1.out.sorted.bw
          
        
          
            
            examples/bigwig/SRR1107837.fastq_GRCh38.77_STAR_Signal.Unique.str1.out.sorted.bw
          
        
          
            
            examples/bigwig/SRR500123.fastq_GRCh38.77_STAR_Signal.Unique.str1.out.sorted.bw
          
        
          
            
            examples/bigwig/SRR500124.fastq_GRCh38.77_STAR_Signal.Unique.str1.out.sorted.bw
          
        
          
            
            examples/dalliance_01.png
          
        
          
            
            gbdr_sketch.Rmd
          
        
          
            
            gbdr_sketch.html
          
        
          
            
            inst/extdata/anno_ref.xlsx
          
        
          
            
            inst/extdata/annotation.tab
          
        
          
            
            inst/extdata/reference.tab
          
        
          
            
            inst/htmlwidgets/dallianceR.js
          
        
          
            
            inst/htmlwidgets/dallianceR.yaml
          
        
          
            
            inst/htmlwidgets/lib/dalliance/.bower.json
          
        
          
            
            inst/htmlwidgets/lib/dalliance/.gitignore
          
        
          
            
            inst/htmlwidgets/lib/dalliance/LICENSE.txt
          
        
          
            
            inst/htmlwidgets/lib/dalliance/README.md
          
        
          
            
            inst/htmlwidgets/lib/dalliance/TODO.md
          
        
          
            
            inst/htmlwidgets/lib/dalliance/css/bootstrap-scoped.css
          
        
          
            
            inst/htmlwidgets/lib/dalliance/css/bootstrap.css
          
        
          
            
            inst/htmlwidgets/lib/dalliance/css/dalliance-scoped.css
          
        
          
            
            inst/htmlwidgets/lib/dalliance/css/dalliance.css
          
        
          
            
            inst/htmlwidgets/lib/dalliance/css/font-awesome.min.css
          
        
          
            
            inst/htmlwidgets/lib/dalliance/example-browsers/human37.html
          
        
          
            
            inst/htmlwidgets/lib/dalliance/example-browsers/human38.html
          
        
          
            
            inst/htmlwidgets/lib/dalliance/example-browsers/mouse38.html
          
        
          
            
            inst/htmlwidgets/lib/dalliance/fonts/FontAwesome.otf
          
        
          
            
            inst/htmlwidgets/lib/dalliance/fonts/fontawesome-webfont.eot
          
        
          
            
            inst/htmlwidgets/lib/dalliance/fonts/fontawesome-webfont.svg
          
        
          
            
            inst/htmlwidgets/lib/dalliance/fonts/fontawesome-webfont.ttf
          
        
          
            
            inst/htmlwidgets/lib/dalliance/fonts/fontawesome-webfont.woff
          
        
          
            
            inst/htmlwidgets/lib/dalliance/glyph-test/features.xml
          
        
          
            
            inst/htmlwidgets/lib/dalliance/glyph-test/stylesheet.xml
          
        
          
            
            inst/htmlwidgets/lib/dalliance/gulpfile.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/help/index.html
          
        
          
            
            inst/htmlwidgets/lib/dalliance/hubstub.html
          
        
          
            
            inst/htmlwidgets/lib/dalliance/img/README.md
          
        
          
            
            inst/htmlwidgets/lib/dalliance/img/glyphicons-halflings.png
          
        
          
            
            inst/htmlwidgets/lib/dalliance/img/loader.gif
          
        
          
            
            inst/htmlwidgets/lib/dalliance/img/spinner_16.gif
          
        
          
            
            inst/htmlwidgets/lib/dalliance/img/spinner_192.gif
          
        
          
            
            inst/htmlwidgets/lib/dalliance/img/spinner_24.gif
          
        
          
            
            inst/htmlwidgets/lib/dalliance/img/spinner_32.gif
          
        
          
            
            inst/htmlwidgets/lib/dalliance/img/spinner_48.gif
          
        
          
            
            inst/htmlwidgets/lib/dalliance/img/spinner_96.gif
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/bam.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/bedwig.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/bigtab.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/bigwig.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/bin.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/browser-ui.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/cbrowser.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/chainset.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/cigar.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/color.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/das.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/domui.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/encode.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/ensembljson.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/export-config.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/export-image.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/export-ui.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/exports.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/feature-draw.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/feature-popup.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/features.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/fetchworker.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/glyphs.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/jbjson.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/kspace.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/lh3utils.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/memstore.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/numformats.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/overlay.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/probe.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/sample.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/search.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/sequence-draw.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/session.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/sha1.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/sourceadapters.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/sourcecompare.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/spans.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/style.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/svg-export.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/svg-utils.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/tabix-source.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/tabix.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/thub.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/tier-actions.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/tier-edit.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/tier.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/track-adder.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/trix.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/twoBit.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/utils.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/vcf.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/version.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/js/zoomslider.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/karma.conf.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/package.json
          
        
          
            
            inst/htmlwidgets/lib/dalliance/polyfills/html5slider.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/test.html
          
        
          
            
            inst/htmlwidgets/lib/dalliance/test/bam-test.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/test/bbi-test.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/test/bigtab-test.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/test/tabix-test.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance/test/twobit-test.js
          
        
          
            
            inst/htmlwidgets/lib/dalliance_compiled/dalliance-compiled.js
          
        
          
            
            rsconnect/documents/gbdr_sketch.Rmd/rpubs.com/rpubs/Publish Document.dcf
          
        
          
            
            serve_http.py
          
        
          
            
            tests/testthat.R
          
        
          
            
            vignettes/dallianceRManual.Rmd
          
        
          
            
            worker-all.js