inst/htmlwidgets/lib/dalliance/TODO.md

In uhlitz/dallianceR: A grammar of genome browsing with dalliance

For 0.14

• [ ] Replace feature popups with inspector-like interface
• [ ] Apply track-edit operations to multiple tracks at once.
• [ ] Typeahead for search-by-gene-ID
• [ ] Animate when leaping/toggling.
• [ ] Search-by-name (or description) in track-adder.
• [ ] Support for non-positional annotations (UI hookup for bigtab client)

For 0.15

• [ ] Feature selection
• [ ] Better zoom control
  • Show all toggle levels.
  • Some kind of feedback for toggling.
• [ ] More Tabix payloads (GFF/GTF)
• [ ] Clean up featureSource creation (make async?)

For 1.0

• [ ] Undo/redo.
• [ ] History of recently-viewed tracks.
• [ ]Out-to-chromosome zooming
  • Probably needs a better set of semantic zoom hints in the stylesheet language.
• [ ] Try to preserve layout when expanding/collapsing variants.
• [ ] Chromosome overviews.

For 1.1

Future

• New stylesheet language
• More incremental data fetching.
• Construct as a web-component (polymer?)
• Better tiling in renderer.
• Better ways of loading alignments (HAL?)

Nice to have

• Tier groups
  • Should yZoom together.
  • Other configuration stuff?
  • Drag together when re-ordering????
• Dedicated configuration/persistance language?
• Distance between a pair of features.
• Multiple configurations/session switching/etc?
• RDF/FALDO support?

Blue sky

• MultiContigView equivalent?
• Client-side analysis of quantitative tracks.
• Better presentation of gene models in the light of expression data.

uhlitz/dallianceR documentation built on May 3, 2019, 2:22 p.m.