performBackgroundCorrection: Perform background correction and remove bad probes.

In uit-bdps/pippeline: Pipeline for processing high-dimensional multi-omics biobank datasets

Description

Perform background correction and remove bad probes.

Usage

performBackgroundCorrection(data, negCtrl)

Arguments

data	lumi object with gene expression matrix exprs(data) where colnames(exprs(data)) = sample IDs ( = labnr) rownames(exprs(data)) = probe IDs
negCtrl	matrix where rownames(negCtrl) is a superset of colnames(exprs(data)) each column in negCtrl contains expression values for a negative control probe

Value

background-corrected lumi object where colnames(exprs(data)) = sample IDs ( = labnr) rownames(exprs(data)) = probe IDs

uit-bdps/pippeline documentation built on May 22, 2019, 5:35 p.m.