This R package contains mini datasets for running tests and examples in the rock R package.
Whole exome sequencing data from the HCC2218 breast carcinoma cell line (available via https://github.com/Illumina/canvas#demo-tumor-normal-enrichment-workflow) were analysed using the bcbio toolkit and/or individual tools. Processed output from the following files is available:
HCC2218 BAF values from AMBER.
HCC2218 CNVkit cnr file (first 1,000 values from chr22)
AZ300 cancer gene panel.
The above datasets can be accesed with
system.file("extdata", <file-name>, package = "pebbles").
system.file("templates", "circos", "circos_sv.conf")
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