getPPD: getPPD
In umich-biostatistics/PRECISE: Personalized Cancer-specific Integrated Network Estimation
Description
Usage
Arguments
Details
Value
Description
This function is to calculate posterior predictive distribution (delta interval) of each of the proteins for each patient
Usage
1
getPPD(pd, delta)
Arguments
pd
the pdlist output from getBMS
delta
a cutoff for patient-specific activation status for a protein
Details
To determine the activation status of a protein, we compute the posterior probabilities of the protein to lie in the delta-interval around zero (neutral), to be greater than delta, (activated) or less than -delta (suppressed).
Value
results
a matrix includes all the patient-specific results, samplename, fitted value, sd, positive prob. (activated), negative prob. (suppressed), neutral prob., and activation status
pd
an object from pred.density
umich-biostatistics/PRECISE documentation built on June 8, 2019, 2:34 p.m.
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Description Usage Arguments Details Value
Description
This function is to calculate posterior predictive distribution (delta interval) of each of the proteins for each patient
Usage
1 | getPPD(pd, delta)
|
Arguments
pd |
the pdlist output from getBMS |
delta |
a cutoff for patient-specific activation status for a protein |
Details
To determine the activation status of a protein, we compute the posterior probabilities of the protein to lie in the delta-interval around zero (neutral), to be greater than delta, (activated) or less than -delta (suppressed).
Value
results |
a matrix includes all the patient-specific results, samplename, fitted value, sd, positive prob. (activated), negative prob. (suppressed), neutral prob., and activation status |
pd |
an object from pred.density |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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